Question: Concatenate multiple MUSCLE alignment result to build a phylogenetic tree
0
gravatar for huiyus97
4 months ago by
huiyus970
huiyus970 wrote:

Hi,

I want to build a phylogenetic tree based on single copy orthologous proteins which I got using OrthoMCL. I aligned each protein group using MUSCLE separately and I want to concatenate those proteins to build a phylogenetic tree using RAXmL. Could someone please recommend me some tools which I can use to concatenate those protein sequences, or can I do it with RAXmL?

Thank you so much for your help!

muscle protein alignment • 253 views
ADD COMMENTlink modified 4 months ago by Mensur Dlakic7.1k • written 4 months ago by huiyus970

Plenty of methods here:

How to concatenate multiple fasta file

ADD REPLYlink written 4 months ago by h.mon31k
0
gravatar for Mensur Dlakic
4 months ago by
Mensur Dlakic7.1k
USA
Mensur Dlakic7.1k wrote:

This script works well. I suggest you trim the alignments before concatenation - see here and here.

ADD COMMENTlink written 4 months ago by Mensur Dlakic7.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1746 users visited in the last hour