Concatenate multiple MUSCLE alignment result to build a phylogenetic tree
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9 months ago
huiyus97 • 0

Hi,

I want to build a phylogenetic tree based on single copy orthologous proteins which I got using OrthoMCL. I aligned each protein group using MUSCLE separately and I want to concatenate those proteins to build a phylogenetic tree using RAXmL. Could someone please recommend me some tools which I can use to concatenate those protein sequences, or can I do it with RAXmL?

Thank you so much for your help!

alignment protein muscle • 635 views
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9 months ago
Mensur Dlakic ★ 11k

This script works well. I suggest you trim the alignments before concatenation - see here and here.

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