Entering edit mode
4.4 years ago
screadore
▴
20
I need the whole genome sequence for a human genome for a trio analysis. I'm trying to test annotation software and can't seem to find a reliable database to get these FASTA files. So any insight would be very insightful. Thank you!
Sequence/alignment files are available at this GIAB data site. You could generate a consensus based on the alignments provided.
How do I go about recreating them? Thank you for your insight!
You can also use
g2gtools
(LINK) along with the VCF files to recreate the custom genomes.Thank you! So if I use g2gtools do you know which command I can use to recreate the custom genomes from the VCF?
Follow the workflow described here.