Question: WGCNA to Cytoscape which file to use
gravatar for evelyn
15 days ago by
evelyn100 wrote:


I have created two files from WGCNA to Cytoscape export: node.txt and edge.txt node.txt:

nodeName    altName nodeAttr[nodesPresent, ]
V510    NA  grey
V580    NA  tan
V640    NA  lightcoral


fromNode    toNode  weight  direction   fromAltName toAltName
V510    V580    0.11    undirected  NA  NA
V510    V590    0.94    undirected  NA  NA
V510    V860    0.79    undirected  NA  NA

I want to make a network figure representing relationships between the traits that are used in this analysis. It is my first time using Cytoscape and I could not find which of these two files to use for creating a trait network figure. Thank you for your help!

rna-seq • 83 views
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