Question: WGCNA to Cytoscape which file to use
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gravatar for evelyn
15 days ago by
evelyn100
evelyn100 wrote:

Hello,

I have created two files from WGCNA to Cytoscape export: node.txt and edge.txt node.txt:

nodeName    altName nodeAttr[nodesPresent, ]
V510    NA  grey
V580    NA  tan
V640    NA  lightcoral

edge.txt:

fromNode    toNode  weight  direction   fromAltName toAltName
V510    V580    0.11    undirected  NA  NA
V510    V590    0.94    undirected  NA  NA
V510    V860    0.79    undirected  NA  NA

I want to make a network figure representing relationships between the traits that are used in this analysis. It is my first time using Cytoscape and I could not find which of these two files to use for creating a trait network figure. Thank you for your help!

rna-seq • 83 views
ADD COMMENTlink written 15 days ago by evelyn100
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