Question: MAPQ mapping quality
0
gravatar for sami
6 weeks ago by
sami20
sami20 wrote:

I would like to filter only mapped reads with hight MAPQ. I use bowtie2 What value should i give to MAPQ? i would like to make variant calling after filtering good reads from bam.

call mpileup snp • 137 views
ADD COMMENTlink written 6 weeks ago by sami20
3
gravatar for RamRS
6 weeks ago by
RamRS30k
Baylor College of Medicine, Houston, TX
RamRS30k wrote:

Useful links:

ADD COMMENTlink written 6 weeks ago by RamRS30k
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