Question: Purpose of genomescope/preliminary analysis of unassembled raw reads
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gravatar for Ada
7 weeks ago by
Ada10
Ada10 wrote:

What is the ultimate purpose of using genomescope prior to assembly? I understand what genomescope does but why should it be done?

sequencing alignment assembly • 100 views
ADD COMMENTlink written 7 weeks ago by Ada10

If you are working with a genome where you have no information about the size, ploidy then you want to estimate that before trying assemblies. As you recall, assemblers can benefit from some of that information. If you are working with a genome where that information is known then you are verifying that your data shows similar characteristics.

ADD REPLYlink written 6 weeks ago by genomax89k
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