Question: Recommended graph for proteins?
0
gravatar for 1234anjalianjali1234
6 weeks ago by
India
1234anjalianjali123430 wrote:

hello,

I want to plot my protein data (length and Serine amino acid percentage) into a feasible plot. Length ranges up to 300 aa.

My data (have 700 proteins)

Please recommend something.

Thankyou

plot R • 130 views
ADD COMMENTlink modified 6 weeks ago by Mensur Dlakic6.5k • written 6 weeks ago by 1234anjalianjali123430
0
gravatar for Mensur Dlakic
6 weeks ago by
Mensur Dlakic6.5k
USA
Mensur Dlakic6.5k wrote:

How about a simple histogram showing a distribution of sizes?

enter image description here

ADD COMMENTlink written 6 weeks ago by Mensur Dlakic6.5k

Thankyou, Mensur Dlakic

But it would be great if it can also include Serine percentage.

ADD REPLYlink written 6 weeks ago by 1234anjalianjali123430

Serine composition can be presented in another histogram plot. If you are trying to show the correlation between protein sizes and serine percentage, a histogram of their ratios may be appropriate. Or a scatter plot with size on X and serine composition on Y. If your proteins have different amounts of serine compared to general proteins, you may want to show a histogram with both distributions in the same plot.

ADD REPLYlink written 6 weeks ago by Mensur Dlakic6.5k

Thankyou Mensur Dlakic,

I'll try to make a scatter plot of both parameters.

ADD REPLYlink written 5 weeks ago by 1234anjalianjali123430
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