How do I find the network path for the interaction of 2 genes

Question

[danson.wooi]

I want to do a network analysis on a few genes to see how they interact but I am not sure which tool is best. I tried Biogrid but I can only input one gene. i am very new to this kind of analysis so I was wondering if anyone can recommend tools or a method?

Answer 1

[Kevin Blighe]

I recommend taking some time to learn igraph: Network plot from expression data in R using igraph

Once you have your graph object, you can then follow this to find the shortest path between your 2 vertices [genes]: https://igraph.org/r/doc/distances.html

Kevin