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3.7 years ago
hydra_questions
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I'm using trinity to do a de novo transcriptome assembly + DGE analysis. The problem is I need to conduct a more complicated analysis than the simple pairwise DE set up provided in the Trinity software.
The count matrix has a .matrix suffix so RStudio is not letting me import. I was wondering if anyone knew how to upload the matrices produced by Trinity into RStudio.
Thanks in advance!
What is the output of:
If the columns are tab-separated, you should be able to use
read.table(file, sep="\t", header = TRUE)