Finding common and different genes between species
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3.8 years ago
Ric ▴ 430

Hi, We have two plants which one of them is the wild type. For each of them, I used the Scallop results with TransDecoder. How is possible to determine which are common and different genes between those two plants from Scallop/Transdecoder results?

Thank you in advance,

RNA-Seq gene annotation • 727 views
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Are these plants related? You may look at presence/absence variation tools. These are part of pangenome/transcriptome analysis methods. Here is one approach.

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