Population private SNPs in GNOMAD subpopulations
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21 months ago
ThePlaintiff ▴ 70

Is it possible to obtain population private snps from GNOMAD data? For instance if I wanted to find snps that are private in 1000 genome subpopulations, is it possible to obtain this data?

SNP population private • 450 views
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there is no such information in the gnomad vcf.

wget -q -O - "https://storage.googleapis.com/gnomad-public/release/2.1.1/vcf/exomes/gnomad.exomes.r2.1.1.sites.22.vcf.bgz" | gunzip -c | bcftools view --header-only | grep -i -E '(1k|1000)'
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