Question: correct order for pathway analysis
7 weeks ago by
Sara • 130
Sara • 130 wrote:
I am doing pathway analysis but there a lot of tutorials so, I am looking for the correct way of doing that.
1- I got DE genes (up and down regulated) 2- filter them based on log2 of FC. only the genes with Log2FC > 1 or Log2FC < -1 are used for pathway analysis 3- I used up and down regulated genes together (only gene name) for pathway analysis (using DAVID) to identify up and down regulated pathways.
the question is that, ma I following the correct order? if not what is the correct order and tool?
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