Append/Merge/Combining multiple VCF files
0
0
Entering edit mode
3.6 years ago
akshaykum684 ▴ 20

Hello Everyone,

I have a list of VCF files from specific ethnicity such as American Indian, Chinese, European etc

Under each ethnicity, I have around 100+ files.

Currently, I computed the VARIANT QC metrics such as call_rate, n_het etc like below for one file

image is here

How can I do this across all files under a specific ethnicity?

Can help me with this?

Is there any python or R or Unix approach to do this?

sequence RNA-Seq next-gen sequencing ChIP-Seq • 502 views
ADD COMMENT

Login before adding your answer.

Traffic: 2044 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6