I am trying to get "ENSEMBL_MART_VEGA" names for my genes.
For example, the following gene seems to be a havanna/vega annotation:
When I query the hgnc_symbol from bioMart as follows, I get no corresponding symbol, which is expected:
ensembl <- useEnsembl(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")
conversion <- getBM(attributes = c("ensembl_transcript_id", "ensembl_gene_id","hgnc_symbol"), filters = c("ensembl_transcript_id"), values = unique(bed$transcript_id), mart = ensembl)
On the following page, there is this "ENSEMBL_MART_VEGA".
However, when I use the listMarts(), I do not get the "ENSEMBL_MART_VEGA" as they do in the above link.
Does anyone know why this might be, or how I might get "vega" gene names for my genes?