Mira Ion Torrent Not Sanger
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Entering edit mode
12.2 years ago
diltsjeri ▴ 470

Hi,

I'm trying out MIRA with a reference sequence. I gave it the command...

mira --project=special --job=mapping,genome,draft,iontor -SB:lib=1:sbuip=1:bsn=reference IONTOR_SETTINGS -AS:mrl=50:bdq=10 >log

When I look at the info it tells me that

Avg. total coverage: 30.98. Avg. coverage per sequencing technology,Sanger: 23.23, 454: 0.0, IonTor: 7.75, and 0 for PacBio, Solexa, and Solid.

Why am I getting Sanger coverage? Is it assuming I'm using Sanger in some sort of default?

mira ion-torrent sanger • 2.5k views
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