Question: How to download synteny form ENSEMBL
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gravatar for yunzhe.jiang97
4 months ago by
yunzhe.jiang970 wrote:

Hi guys.

I am trying to do some researches on synteny across human and non-human primates. It is known that synteny across species has been identified by ENSEMBL, but I want to download the exact chromosomal region rather than a simple figure provided by the website.

The ENSEMBL website is as follows (FYI) : https://uswest.ensembl.org/Homo_sapiens/Location/Synteny?r=17:63992802-64038237;otherspecies=Gorilla_gorilla

synteny R • 173 views
ADD COMMENTlink modified 4 months ago by GenoMax94k • written 4 months ago by yunzhe.jiang970
0
gravatar for GenoMax
4 months ago by
GenoMax94k
United States
GenoMax94k wrote:

You will need to use compara API provided by Ensembl. NCBI Homologene project also has the information that can be easily downloaded.

ADD COMMENTlink modified 3 months ago • written 4 months ago by GenoMax94k

Hi, I am not familiar with Perl at all. Is there another way to get syntenic regions?

ADD REPLYlink written 3 months ago by yunzhe.jiang970

Hi, I am not familiar with Perl at all. Is there another way to get syntenic regions?

ADD REPLYlink written 3 months ago by yunzhe.jiang970
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