Hello everyone, I actually made several assembly of eukaryotic genomes and I found some missasemblies in the file by mapping reads against the fasta assembly file.
So I wondered if someone knew a performant tool in order to
correct misassemblies in scaffolds for
eucaryotic genomes specially?
I know for instance REAPR from Sanger or MEC but I do not really know if there is no better tool for eucaryotic genome?
Thank you very much