I using GDC-TCGA data to training in the SVM model. For the testing set Use GEO data.
The problem is GDC-TCGA was HT-seq and GEO FPKM.
is there any formula or any conversion tool to convert from FPKM to counts ????
I am pretty sure you can also get HT-Seq FPKM data from GDC. Of coz, the two FPKM method may not be exactly the same
No, unless you have exact code and the gene length they used to exactly reverse the operations.
GEO datasets should contain raw data which you can download, see e.g. sra-explorer.info
Thanks for your reply
I will check it
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