Question: FPKM to HTseq
0
gravatar for Ali
4 weeks ago by
Ali0
south africa
Ali0 wrote:

Hi everyone I using GDC-TCGA data to training in the SVM model. For the testing set Use GEO data. The problem is GDC-TCGA was HT-seq and GEO FPKM. is there any formula or any conversion tool to convert from FPKM to counts ????

Kind regards

rna-seq gene • 93 views
ADD COMMENTlink modified 4 weeks ago by ATpoint40k • written 4 weeks ago by Ali0
0
gravatar for ATpoint
4 weeks ago by
ATpoint40k
Germany
ATpoint40k wrote:

No, unless you have exact code and the gene length they used to exactly reverse the operations. GEO datasets should contain raw data which you can download, see e.g. sra-explorer.info

ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by ATpoint40k

Thanks for your reply I will check it

regards

ADD REPLYlink written 4 weeks ago by Ali0
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