I have single cell data from one sample that I am trying to run through the Seurat pipeline. After having obtained the UMAP plot, I am trying to compare it to the PHATE plot. However, I can't seem to run PHATE on a Seurat object. What are some ways I can go about this? Can I convert my Seurat object to some other data type and run the function on it? is there a PHATE function in Seurat?
Question: Running PHATE on Seurat Object
4 months ago by
fouerghi20 • 30
fouerghi20 • 30 wrote:
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