Question: sparse peak calling
0
gravatar for kanwarjag
25 days ago by
kanwarjag1.1k
United States
kanwarjag1.1k wrote:

I have a Chipseq data and I expects peaks should be sparse. Which tool may be best to call sparse peaks? Can I also use same tool for calling sparse peaks of cut and Run experiment.

Thanks

chip-seq • 104 views
ADD COMMENTlink modified 25 days ago by AS0 • written 25 days ago by kanwarjag1.1k

Do you mind defining what you consider sparse peaks?

ADD REPLYlink written 25 days ago by rpolicastro1.9k

The low read depths and background levels and broader peaks.

ADD REPLYlink modified 24 days ago • written 25 days ago by kanwarjag1.1k

Hi Kanwarjag, why don't you increase the depth of sequencing ? or merge more IP

ADD REPLYlink written 24 days ago by Morris_Chair200
0
gravatar for AS
25 days ago by
AS0
AS0 wrote:

You can try SEACR : https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-019-0287-4

ADD COMMENTlink written 25 days ago by AS0
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