sparse peak calling
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3.7 years ago
kanwarjag ★ 1.2k

I have a Chipseq data and I expects peaks should be sparse. Which tool may be best to call sparse peaks? Can I also use same tool for calling sparse peaks of cut and Run experiment.

Thanks

ChIP-Seq • 991 views
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Do you mind defining what you consider sparse peaks?

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The low read depths and background levels and broader peaks.

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Hi Kanwarjag, why don't you increase the depth of sequencing ? or merge more IP

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