Hi everyone, I was wondering if anyone knows a quick way by command line to find information on the reads used for an assembly, by information I mean especially if it was
paired end or
mate end since if it is only an assembly made by pairend I will use Reapr in order to break missasemblies scaffols.
I need this information for several hundred assemblies, here is an example:
I guess fetch would be fine but does someone know how to use it in order to get this information?
Thanks for your help and see you soon