Question: Redundancy removing in sequences
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gravatar for malshanithennakoon
4 months ago by
malshanithennakoon0 wrote:

How does remove redundancy using derep.py code in sequences, in Bio-Linux and Ubuntu?

sequencing sequence • 191 views
ADD COMMENTlink modified 4 months ago by brian.fristensky140 • written 4 months ago by malshanithennakoon0

Read this and edit your question to show us what effort you've invested: [[ Please read before posting a question ::: How To Ask A Good Question ]]

ADD REPLYlink written 4 months ago by Ram32k
0
gravatar for brian.fristensky
4 months ago by
Canada/University of Manitoba
brian.fristensky140 wrote:

If you're using Linux or MacOSX you definitely want to try the BIRCH system.

See the BIRCH Multiple sequence alignments tutorial which shows how to eliminate redundant sequences using CD-HIT.

You can learn more about BIRCH on our YouTube channel at https://www.youtube.com/channel/UC9_3TfH3sjE0YdToVMChq-w?view_as=public

ADD COMMENTlink written 4 months ago by brian.fristensky140
0
gravatar for Mensur Dlakic
4 months ago by
Mensur Dlakic9.1k
USA
Mensur Dlakic9.1k wrote:

There are numerous software tools for this problem. None of them is a standard or so much better than the others that one would definitely want to try it.

By the way, there are numerous links on the right side of this page that probably answer the poster's question.

ADD COMMENTlink written 4 months ago by Mensur Dlakic9.1k

thank you ver much. I used sRNA tool to remove the redundancy

ADD REPLYlink written 15 days ago by malshanithennakoon0

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.

Upvote|Bookmark|Accept

ADD REPLYlink written 15 days ago by Ram32k
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