Visualizing alternative splicing events
0
0
Entering edit mode
5 months ago
Nelislam4 ▴ 20

Dears,

I have TPM read counts of RNA-seq data from Salmon, then I have used SUPPA2 for alternative splicing events detection. The point is, I need a tool to visualize the alternative splicing events across conditions? and what files should I consider for these visualization, TPM read counts or psi files from SUPPA2?

I really appreciate your help,

Nour

RNA-Seq • 226 views
ADD COMMENT
0
Entering edit mode

I would show the PSI values in boxplots per group as well as read coverages for individual events similar to the one depicted in this figure: Fig4.f

ADD REPLY
0
Entering edit mode

Thanks for your response, actually the link requires login domain as certificate.

Did you means avg PSI values which is in .clustvec file?

Thanks, Nour

ADD REPLY
1
Entering edit mode

sorry that was through a proxy, the link should work now.

ADD REPLY

Login before adding your answer.

Traffic: 2440 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6