Hi, I run RepeatMasker with a test data (just 1Mb), but the software are not always "work". Some times it stops at line 2 (Search Engine: NCBI/RMBLAST)more than 4 hours, I don't know why.
RepeatMasker -species drosophila -pa 2 t.fa RepeatMasker version open-3.3.0 Search Engine: NCBI/RMBLAST
Is there something wrong with my software?
the command is
RepeatMasker -species drosophila -pa 2 xxxx.fa
input like this
linux RepeatMasker version open-3.3.0
when it works and when it does not?
I run it with 6 data. When output 4 data, it begin "stop work" at the 4th data and remain on "Search Engine: NCBI/RMBLAST" for 4 hours. Finally,I stopped the software. (6 data have the same size, and all fly data) I try run the 6 data again, but the software remain on "Search Engine: NCBI/RMBLAST" on the 1st data.I stopped the software.
After 6 hours, the software begin work now, and after repeat 2 data it begin remain on "Search Engine: NCBI/RMBLAST"
What's wrong with it? Or is there something wrong with my linux platform?