Convert multi amino acid sequence file (.faa) to nucleotide sequence file (multifasta; .fa)?
1
0
Entering edit mode
3.5 years ago

I have a .faa file that includes gene sequences ~714 individuals. I want to convert this to a nucleotide sequence file (multifasta; .fa) so I can use SNPs to make a tree. Is this possible?

alignment • 809 views
ADD COMMENT
1
Entering edit mode
3.5 years ago
JC 13k

not much, the conversion from aa -> nucl depends on codons, some aa has 6 possible codons, how do you choose the original one?

ADD COMMENT
0
Entering edit mode

well duh, I should've thought of that...! Thanks!

ADD REPLY

Login before adding your answer.

Traffic: 3285 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6