I have a list of metabolites quantified using targeted metabolomics. I then have KEGG KOs inferred from metagenomic data.
I would like to see whether there is any KEGG pathway among the one detected that has several metabolites in my data.
In other words, I want to see what pathway is enriched in the metabolites I detected. I am aware of Bioconductor packages as pathview, but there I need to plot each pathway individually. Instead I am more interested in have a sort of automatic screening that could tell me that a path in my metagenomic datasets has also many metabolite matches in my metabolomic dataset.
I could also use another database, I am not limited to KEGG, this was just a initial choice. Any idea whether this is feasible?