I'm working through an example on the vargeno github page, and in their example they have a file called snp.vcf
How would such a file be created? Would it be something you would have to write manually, or does a program generate it?
Do you need specifically the SNPs?
The VCF extension may be used for vCard files, but in the context of SNPs and genotyping, a minimum google search should have taken you to The Variant Call Format Specification
VCFs are generally created from real data using GATK, FreeBayes, samtools/bcftools, etc.
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