Question: MUMmer plot error. How to resolve?
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dan2010eve • 0 wrote:
My third year comp sci friend got me this far, I hope you guys can help me with the last inch! For the record, I have practically no coding experience. I am using the 3.9.4 alpha version of MUMmer.
Here is the manual I have been following: http://mummer.sourceforge.net/examples/
I am at part 2.2.2 Running the Mummer plot, and I type in the final line to generate the plot.
dansterboy@DESKTOP-57RMBGG:/mnt/c/mummer/MUMmer-3.9.4alpha$ mummerplot -x "[0,8666124]" -y "[0,9025608]" -postscript -p mummer mummer.mums
Can't use 'defined(%hash)' (Maybe you should just omit the defined()?) at /usr/bin/mummerplot line 884.
So I go to investigate the error and I dont know how to proceed from here (this is the line I get once I ctrl x dash and enter 884).
if ( defined (%$rref) ) {
#-- skip reference sequence or set atts from hash
if ( !exists ($rref->{$idR}) ) { next; }
else { ($refoff, $reflen, $refdir) = @{$rref->{$idR}}; }
What should I do?
Hi dan2010eve
I'm deleting our previous conversation so this post can stay on track and address the problem you're facing.
Hello dan2010eve!
It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/14990/mummer-plot-error-line-884-what-to-do
This is typically not recommended as it runs the risk of annoying people in both communities.