extract publication titles based on accession number from uniprot in python
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4 months ago
taojincs ▴ 50

Is there any way to extract publication titles based on accession numbers (not UniProt identifiers) from UniProt in python?

I know how to do it in Java using UniProt Java API but wonder if there is any way to do it in python. Thank you!

uniprot python protein • 307 views
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What kind of identifiers do you have if not UniProt identifiers? Have you had a look at the REST API of the UniProt website, https://www.uniprot.org/help/api ?

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Thank you very much!

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3 months ago
taojincs ▴ 50

I figured it out.

Firstly, map the accession number into the entry id: https://www.uniprot.org/uploadlists/

Then, https://www.uniprot.org/help/api_retrieve_entries will help out.

Both can be achieved in python.

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