I am analysing exome sequence result.
How can I upload a list of snp number(rs...) and get their minor allele frequency as a txt/Excel file?
the minor allele frequency is always defined relative to a dataset. Do you want to get their MAF in all human populations? Or only in some of them? Or in other species?
I need MAF in European population.Thanks
Is that possible to get MAF of SNVs which do not have rsnumber (In European population)? information is (chrN:XXX)
Thanks in advance!
You can use the UCSC Table Browser.
If you need details of what is actually in the table, you can click on the "describe table schema" after step 3 above.
thanks Sean I found it.
You can also get the MAF from the Biomart portal.
The following instructions are for Biomart version 0.7, because I still haven't learned how to use the newer version.
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