Question: Method for normalization of sequencing depth?
gravatar for cuteanjali
15 days ago by
cuteanjali0 wrote:

I have two DNA sequencing samples with different sequencing depths. I want to check if there is any enrichment of genomic regions in one sample vs another. Before that, I need to normalize the samples for sequencing depth what is the most suitable method to use?

sequencing genome • 97 views
ADD COMMENTlink written 15 days ago by cuteanjali0

Hello, which kind of assay is this? There are plenty of norm techniques, depending on the type of data. Please give more details. Do you have experimental replicates?

ADD REPLYlink modified 15 days ago • written 15 days ago by ATpoint44k

we have done sequencing of different chromatin fragments where both the samples have the same genomic coverage but one sample should have relative enrichment of different genomic regions as compared to the second sample. But in order to compare both, I need to normalize the sequencing depth. No, I do not have replicates

ADD REPLYlink written 12 days ago by cuteanjali0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1633 users visited in the last hour