How to select sample from Seurat object?

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3.3 years ago

my6 • 0

Hi, I am analyzing 10x single-cell data from GEO with the help of the Seurat package. This data set contains 4 different samples which I can identify by the 18th letter in the cells barcode ("1", "2", "3"? "4"), how can I select only one of them (for example "1") for analysis?

Thank you :)

RNA-Seq single-cell RNA seq • 1.8k views

ADD COMMENT • link 3.3 years ago by my6 • 0

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Is there a column in the metadata that has sample information, or is the only sample information in the cell barcodes? You can check the metadata with head(seurat_object[[]]).

ADD REPLY • link 3.3 years ago by rpolicastro 13k

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yes, I made a column in which now I have this information. Also, I know from which to which cell in a row is it but I am not sure how can I select all the data for these cells as it is not a simple table but a Seurat object

ADD REPLY • link 3.3 years ago by my6 • 0

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