Genotyping: array variants from WGS
0
0
Entering edit mode
4 months ago

Dear community members,

I need to genotype 6 millions of array markers from a BAM WGS file.

It works perfectly for substitutions, e.g., ref allele C, alt allele G,, but indels are problematic - the "format" of array variants is a bit different, for example, ref/alt alleles for array can be:

ACG ACGACG

which would be just insertion of ACG in VCF file from WGS.

Do you know any tools that can genotype these weird array variants in WGS?

array WGS • 129 views
ADD COMMENT

Login before adding your answer.

Traffic: 2450 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6