Error in extracting SRA file: symbol lookup error
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Entering edit mode
6 months ago

Hello

I am trying to extract fastq files from SRA files. I used the remote command

fastq-dump  --split-files SRR9649373

and also manually downloaded the SRA file and then ran the local command

fastq-dump -I  --split-files SRR9649373.1

but in both cases I get the error:

fastq-dump: symbol lookup error: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so.2: undefined symbol: vdb_mbedtls_md_setup

What would be the problem?

Thank you

software error next-gen sequence • 369 views
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Entering edit mode
6 months ago

Does not matter. I reinstalled all SRAtoolkit and now it works... case closed.

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