Entering edit mode
3.3 years ago
Zahra
▴
110
I want to download the raw counts of RNA-Seq data for PCAWG, but the ICGC just has the BAM format for RNA-Seq data and when I search on the Expression Atlas, it just has the normalized counts of data (TPM, FPKM). Would you mind helping me how can I download the raw counts of RNA-Seq for PCAWG, please?
You can run something like featureCounts on the bam to get counts.