ICGC Raw counts for RNA-Seq data
0
0
Entering edit mode
8 months ago
Zahra ▴ 20

I want to download the raw counts of RNA-Seq data for PCAWG, but the ICGC just has the BAM format for RNA-Seq data and when I search on the Expression Atlas, it just has the normalized counts of data (TPM, FPKM). Would you mind helping me how can I download the raw counts of RNA-Seq for PCAWG, please?

ICGC RNA-Seq Raw counts • 351 views
ADD COMMENT
0
Entering edit mode

You can run something like featureCounts on the bam to get counts.

ADD REPLY

Login before adding your answer.

Traffic: 1720 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6