ICGC Raw counts for RNA-Seq data
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18 months ago
Zahra ▴ 60

I want to download the raw counts of RNA-Seq data for PCAWG, but the ICGC just has the BAM format for RNA-Seq data and when I search on the Expression Atlas, it just has the normalized counts of data (TPM, FPKM). Would you mind helping me how can I download the raw counts of RNA-Seq for PCAWG, please?

ICGC RNA-Seq Raw counts • 598 views
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You can run something like featureCounts on the bam to get counts.

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