Pairwise analysis of RNA-Seq data in Galaxy platform

Question

[gdivolis]

Hello all,

I have paired/matched RNA-Seq data (eg. patients with 2 timepoints, one before and one after their treatment) and I would like to perform a pairwise analysis using Galaxy tools (DESeq2, EdgeR or whatever is more relevant). Has anyone performed such an analysis before in order to help me with the steps after getting the htseq_count files?

Thanks a lot in advance

[ATpoint]

Hello, please post this in the dedicated Galaxy support forum: https://help.galaxyproject.org/ By the way, Galaxy has lots of tutorials and manuals, it is generally appreciated to read these first.