Entering edit mode
3.2 years ago
hello dear friends i hope you are doing well I want to perform a pan genome analysis using EUPAN toolkits. in the EUPAN toolkits manual i found the data to be fastq files i.e. files which contain reads. but in my case I downloaded genomes already assembled (drafft genomes). how can I use EUPAN with genomes already assembled? can someone help me please? and thank you in advance.
If a program requires a certain kind of input then that is a requirement. Not sure what EUPAN does but if you don't have the right kind of input you will need to find a different program. You could generate fake fastq reads from the genomes you have but that may or may not be useful for what you want to do.