extract split-read from bam/cram file
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3 months ago
obaid_lama • 0

Hi,

Im a SC student, i have no knowledge in this filed and I want to extract split-read from cram file can anyone help me please?

thanks

bam cram split-read soft clip • 147 views
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By split-reads do you mean chimeric alignments (where one part of the read is aligned to one chr and other somewhere else)?

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Could be related to this question about spliced reads: How To Extract Spliced Rnaseq Reads

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