I have already ran one whole cycle of TEdevono (S1-S8) on one of my samples successfully, when starting to run the second sample, the
-S 3 -s Blaster -c Recon gets stuck at this step, without returning an error or any output file, last time I let it be for almost 3 days but it was still at the
beginning of step 3 self-alignment with Blaster clustering with Recon
stage without any single output in the directory! when I checked the CPU usage, it was 0.7% of 80 cpus! so it is not running anything! just stuck there.. Does anyone have an idea of why that happens and how to fix this?