What does prot_id and prot_coords represent in Trinotate output
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9 months ago
kmkdesilva ▴ 90

Hi everyone,

I just run Trinotate on a bunch of genomic sequences. The output excel file has two columns called 'prot_id' and 'prot_coords'

1.Can someone please explain what these two attributes mean?

2.Why does same sequence (gene_id) has several prot_ids and prot_coords?

gene_id transcript_id prot_id prot_coords

g_chr2:46269181-46273695 chr2:46269181-46273695 . . chr2:46269181-46273695.p2 254-700[+]

g_chr2:46269181-46273695 chr2:46269181-46273695 . . chr2:46269181-46273695.p5 3989-4381[+]

g_chr2:46269181-46273695 chr2:46269181-46273695 . . chr2:46269181-46273695.p3 1332-1769[+]

g_chr2:46269181-46273695 chr2:46269181-46273695 . . chr2:46269181-46273695.p1 2774-3259[+]

g_chr2:46269181-46273695 chr2:46269181-46273695 . . chr2:46269181-46273695.p4 3567-3965[-]

Trinotate prot_id prot_coords • 186 views
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