Connecting two PDB structures in Pymol
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5 weeks ago
Hansen_869 ▴ 20

Hi! Is it possible to connect two PDB structures easily in Pymol? I basically just want to connect the PDB files from where the sequence of PDB-1 ends to where PDB-2 starts. Is this possible? Thanks!

PDB Structures Connect • 95 views
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I don't know PyMol well enough to answer, but you could do this in the PDB files themselves as they're just plaintext. Just delete the relevant lines at the end of PDB-1 (TER lines I think) and the header info in PDB-2.

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Doing so will just put them on top of each other, as they have almost the same coordinates. I need to link them together.