I have a merged vcf file. Now, I am trying to use PLINK with following command. I tried to run this command in different ways at Window and Linux but it is showing following error. This command should generate .map and .ped files. Please advise in this regard.
$plink --file merged-try --recode --out data OR $plink --file merged-try.vcf --out data ERROR: Window ERROR: No file [ merged-try.ped ] exists. ERROR: Linux Error: Failed to open merged-try.map