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4.1 years ago
Bala Hatun
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How to extract data of refGene Database from UCSC browser using python or perl?
How to extract data of refGene Database from UCSC browser using python or perl?
BioEntrez package in biopython : https://biopython.org/docs/1.75/api/Bio.Entrez.html
Examples of Perl code: https://www.ncbi.nlm.nih.gov/books/NBK25498/
You could simply use EntrezDirect, the command line program.
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You could download the data via the ftp page
https://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/refGene.txt.gz https://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/refGene.txt.gz