How to test the effect of covariate (Ex. Age) on a significant PERMANOVA test of beta diversity?
0
0
Entering edit mode
3.1 years ago
ST • 0

Hi,

Can anyone please help me how to analyze the effect of covariate (Ex. Age) on a significant PERMANOVA (Adonis) test of gut microbiome beta diversity? For my dataset, I ran the following scripts:

Distance:

dist <- phyloseq::distance(ps, method="unifrac")

Adonis test:

adonis(dist ~ DiseaseSeverity , data=meta, permutations=1000)

Results:

Terms added sequentially (first to last)

                                  Df SumsOfSqs  MeanSqs      F.Model      R2         Pr(>F)  
DiseaseSeverity     2    0.3698         0.18489       1.4086      0.07449   0.019 *

Residuals                35    4.5941        0.13126                         0.92551         
Total                        37    4.9639                                               1.00000         
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

So, my question is how should I formulate the script to test the effect of age on the above results? Should I do dist ~ DiseaseSeverity + AgeGroup (or dist ~ AgeGroup + DiseaseSeverity) OR dist ~ DiseaseSeverity*AgeGroup?

Thanks a bunch!

microbiome PERMANOVA Adonis • 809 views
ADD COMMENT

Login before adding your answer.

Traffic: 1634 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6