Hope you are all doing well.
I have a tricky question, maybe someone of you will have some thoughts.
I would like to know if it is possible to get the following information from a Bam File.
a. stranded or un-stranded library?
b. In the case it is stranded: reads are paired-end or single-end?
c. In the case of paired-end: it is a Forward/Reverse of Reverse/Forward library?
In any case, I would like to have your advices if there is any in how to do have all this information easily!
Thank you in advance for your responses!
Have a nice day!