Hi I am looking for good source of algorithms and numerical methods for modelling and simulation mainly oriented to structural bioinformatics. I have found this book "BIOLOGICAL MODELING AND SIMULATION A Survey of Practical Models, Algorithms, and Numerical Methods Russell Schwartz". I would like to know of other sources. I prefer a programming-language-agnostic presentation of the algorithms or a python or fortran oriented examples.
Book(and code) By Dennis Rapaport. The code is in 'simplified' C http://www.ph.biu.ac.il/~rapaport/ http://www.ph.biu.ac.il/~rapaport/mdbook/index.html
Also this book: the newer edition is in Python, while the older in Fortran
For algorithms and Pseudocode: http://www.ii.uib.no/proteinbioinformatics/