Question: How Do I Find The Complete Genome Of A. Fumigatus?
0
gravatar for Layla
6.6 years ago by
Layla50
Layla50 wrote:

Hi: I want to download the complete genome of the A. Fumigatus. I got the complete genomes list from ncbi available at: ftp://ftp.ncbi.nih.gov/genomes/Fungi/Aspergillus_fumigatus_uid14003/. The question is in which of all those files is the complete genome of this fungi?

genome ncbi • 2.2k views
ADD COMMENTlink modified 5.5 years ago by Cacau420 • written 6.6 years ago by Layla50
5
gravatar for AGS
6.6 years ago by
AGS230
Brooklyn, ny
AGS230 wrote:

Moving up a level in that directory you will find this README

This directory includes RefSeq data from fungal genomes if any one of the genome records were designated as NC_ (Complete genomic molecules) or NT_ (Intermediate genomic assemblies) or annotated by multi-genome Gnomon.

Directories of each taxon contain the following file formats:

.asn - nucleotide record in asn.1 format

.faa - protein sequences in fasta format

.ffn - nucleotide sequences of CDS features in fasta format

.fna - total nucleotide sequence in fasta format

.frn - nucleotide sequences of structural RNAs in fasta format

.gbk - full Genbank flat file format

.gff - feature annotation in GFF3 format

.ptt - protein table

.rnt - structural RNA table

.rpt - report file

.val - binary file

ADD COMMENTlink written 6.6 years ago by AGS230
0
gravatar for Cacau
5.5 years ago by
Cacau420
Canada
Cacau420 wrote:

You can download all the staff directly by typing "wget -r ftp://ftp.ncbi.nih.gov/genomes/Fungi/Aspergillus_fumigatus_uid14003/".

ADD COMMENTlink written 5.5 years ago by Cacau420
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