Are Bowtie And Tophat Available By Default In Galaxy?

Question

[Sam ad]

Someone told me to integrate Bowtie and Tophat into the Galaxy but I found they are already available in the Galaxy by default. So, Bowtie and Tophat are available in Galaxy by default, rite?

Answer 1

[Istvan Albert]

Short read mapper that have interfaces by default:

https://bitbucket.org/galaxy/galaxy-dist/src/da9d740fce31/tools/sr_mapping

RNA-Seq tools that are available by default:

https://bitbucket.org/galaxy/galaxy-dist/src/da9d740fce31/tools/ngs_rna