Question: (Closed) What Is The Best Way To Get Gene Expression Depending On The Cell Type ?
gravatar for Rad
7.3 years ago by
Rad800 wrote:

Hello all,

I have a big gene list with genes not necessarily expressed in all cell types, so let's say among the list I have 100 expressed in Embryonic Cell line. I am using standard ENCODE cell type.

Is there a rapid manner to classify these genes depending on the cell type ? Any accessible data from UCSC through programming or through tracks ?



gene expression • 1.8k views
ADD COMMENTlink written 7.3 years ago by Rad800

You can take a look at the GEOquery package in bioconductor if you are an R user.

ADD REPLYlink written 7.3 years ago by Sean Davis25k
gravatar for Pierre Lindenbaum
7.3 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum125k wrote:

I've asked a related question before:

"Geo Profiles": Downloading profile data.

please, close your question if you feel it is a duplicate.

ADD COMMENTlink written 7.3 years ago by Pierre Lindenbaum125k

Great, Thanks Pierre

ADD REPLYlink written 7.3 years ago by Rad800
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