How To Get Swissprot Release 49?
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Entering edit mode
13.2 years ago
Marcinmagnus ▴ 80

Hey,

I found such a text:

2.1 Training dataset

The training dataset contains data from ePSORTdb 2.0 (Rey et al., 2005b), which was used to build PSORTb 2.0, Swiss-Prot version 49 (Wu et al., 2006), plus protein localization data obtained from manual literature search (the latter comprises 30% of the dataset).

http://bioinformatics.oxfordjournals.org/content/26/13/1608.long#sec-2

If you take a look at the release history, the last release was 44. http://www.uniprot.org/news/release-notes

I have to found the date when this "magick" release was created to get all proteins after that date. I do analysis and I don't want to have unique proteins (it means the entries that are created after release 49.

Do you know how to get such date? Date of release 49?

uniprot • 2.4k views
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Entering edit mode

OK, I found it:

http://expasy.org/txt/old-rel/relnotes.49.htm

It was tricky :|

"Release 7.0 of the UniProt Knowledgebase is composed of the UniProtKB/Swiss-Prot Protein Knowledgebase release 49.0 and the UniProtKB/TrEMBL Protein Database release 32.0."

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2
Entering edit mode
13.2 years ago
Marcinmagnus ▴ 80

OK, I found it:

http://expasy.org/txt/old-rel/relnotes.49.htm

It was tricky :|

Release 7.0 of the UniProt Knowledgebase is composed of the UniProtKB/Swiss-Prot Protein Knowledgebase release 49.0 and the UniProtKB/TrEMBL Protein Database release 32.0.

I'm sorry I don't know if I should ask to my question. I hope it will be useful for anybody in the future.

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Entering edit mode
13.2 years ago
Jerven ▴ 660

Using the search function in the news section of uniprot.org you can also find it. which gives http://www.uniprot.org/news/2006/02/07/release as the url for the release note.

To find swiss-prot entries added since then use the query builder to select reviewed:true and date-integrated put 2006-02-07 in the from field and CURRENT in to to field. Which will give as query 2006-02-07

http://www.uniprot.org/uniprot/?query=reviewed:yes+AND+created:[20060207+TO+current]&sort=score

Which are the newly added entries since the 7th of february 2006.

It does not tell you which entries were deleted since that day.

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