Tool: Metagenassist - Statistical Tool For Comparative Genomics
gravatar for Pawel Szczesny
7.9 years ago by
Pawel Szczesny3.2k
Pawel Szczesny3.2k wrote:

From the website of METAGENassist: " To provide a user-friendly, web-based analytical pipeline for comparative metagenomic studies. In particular, METAGENassist allows users to take bacterial census data from different environment sites or different biological hosts, and perform comprehensive multivariate statistical analyses on the data."

Metagenassist performs: 1) taxonomic name normalization; 2) automated taxonomic-to-phenotypic mapping using nearly 20 different phenotypic categories; 3) data integrity/quality checks and 4) data normalization via normalization by constant sum, normalization by a reference feature, sample specific normalization or auto/Pareto/range scaling.

In particular I liked the fact that it reads data generated by mothur, QIIME, MG-RAST, MEGAN, and STAMP.

metagenomics tool • 3.5k views
ADD COMMENTlink modified 7.8 years ago by kadapi970 • written 7.9 years ago by Pawel Szczesny3.2k
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7.8 years ago by
kadapi970 wrote:

i would like to ask you about Coalescence hierarchical Bayesian CHB software do you have experience to use it

i beginner in SNP analysis and my SNP data is like this posistion 1000 acc1. CC acc2. TT acc3. CC .............

but this software just can use for biallelic data such as A/A A/a a/a ..... etc

how to do


ADD COMMENTlink written 7.8 years ago by kadapi970
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